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  5. Adi_g019406

Adi_g019406 (PRP39)


Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g019406

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00179p00033790 AT PRP39-2,... No description available 0.02 OrthoFinder output from all 47 species
Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01028423001 PRP39 No description available 0.03 OrthoFinder output from all 47 species
LOC_Os03g11200.1 PRP39, LOC_Os03g11200 pre-mRNA-processing protein (PRP39) 0.03 OrthoFinder output from all 47 species
LOC_Os08g29124.1 AT PRP39-2,... pre-mRNA-processing protein (PRP39) 0.01 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
MA_6626g0010 PRP39 pre-mRNA-processing protein (PRP39) 0.03 OrthoFinder output from all 47 species
Pir_g60863 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03914 AT PRP39-2, PRP39-2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38613 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56288 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000702_P004 PRP39, Zm00001e000702 pre-mRNA-processing protein (PRP39) 0.03 OrthoFinder output from all 47 species
Zm00001e014226_P001 Zm00001e014226 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR008847 Suf 140 321
No external refs found!