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Aliases : ARF4
Description : not classified & original description: none
Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G19850 | MP, IAA24, ARF5 | Transcriptional factor B3 family protein /... | 0.02 | OrthoFinder output from all 47 species | |
| AT4G23980 | ARF9 | auxin response factor 9 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g103007 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g33345 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g57848 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0129.g048848 | ARF6 | ARF-type transcription factor & original description: CDS=56-2815 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0433.g069577 | ARF6 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07702 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g05759 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g32674 | TIR5, MSG1,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01021552001 | ARF6 | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01035205001 | ARF8, ATARF8 | Auxin response factor 12 OS=Oryza sativa subsp. japonica | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g41800.1 | ARF16, LOC_Os02g41800 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g12750.1 | ARF6 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g17376 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0042.g012712 | ARF6 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g30394 | No alias | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e014833_P002 | ARF1, Zm00001e014833 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025163_P001 | ARF6, Zm00001e025163 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e028396_P001 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e030325_P003 | ARF6, Zm00001e030325 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | HCCA |
| CC | GO:0030915 | Smc5-Smc6 complex | IEP | HCCA |
| BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0043484 | regulation of RNA splicing | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0050684 | regulation of mRNA processing | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0106068 | SUMO ligase complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR033389 | AUX/IAA_dom | 15 | 95 |
| No external refs found! |