Ehy_g09142

Description : regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway & original description: none

Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g09142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00225030	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
AT5G65900	No alias	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Ceric.02G070800.1	Ceric.02G070800	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Dac_g23641	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Ore_g04508	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis...	0.04	OrthoFinder output from all 47 species
Pir_g60443	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Pnu_g08636	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Zm00001e011842_P001	Zm00001e011842	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	398	501
IPR011545	DEAD/DEAH_box_helicase_dom	185	356
IPR025313	DUF4217	543	603

External Links

No external refs found!