Adi_g012725

Description : component *(uS17c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002325_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g012725

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00201470	RPS17, CS17,...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT1G79850	RPS17, CS17, PRPS17	ribosomal protein S17	0.06	OrthoFinder output from all 47 species
Ala_g13255	No alias	component *(uS17c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g47206	RPS17, CS17, PRPS17	component *(uS17c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g43549	No alias	component *(uS17c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aspi01Gene13972.t1	RPS17, CS17,...	component *(uS17c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.11G069100.1	Ceric.11G069100	component *(uS17c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cre02.g118950	emb1129	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Dac_g17145	RPS17, CS17, PRPS17	component *(uS17c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dde_g25473	RPS17, CS17, PRPS17	component *(uS17c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Gb_07769	RPS17, CS17, PRPS17	component psRPS17 of small ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
MA_10123473g0010	RPS17, CS17, PRPS17	component psRPS17 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Nbi_g24135	RPS17, CS17, PRPS17	component *(uS17c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ore_g06145	No alias	component *(uS17c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pp3c11_14630V3.1	RPS17, CS17,...	ribosomal protein S17	0.02	OrthoFinder output from all 47 species
Pp3c1_12860V3.1	RPS17, CS17,...	ribosomal protein S17	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019876	RPS17, CS17, PRPS17	component *(uS17c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g38683	No alias	component *(uS17c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g47246	No alias	component *(uS17c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc03g120630.4.1	RPS17, CS17,...	component psRPS17 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Spa_g48114	RPS17, CS17, PRPS17	component *(uS17c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Tin_g09281	RPS17, CS17, PRPS17	component *(uS17c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Zm00001e028738_P001	RPS17, CS17,...	component psRPS17 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	60	127

External Links

No external refs found!

Adi_g012725

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation