Adi_g011699 (VPS35B)

Aliases : VPS35B

Description : component *(VPS35) of Retromer protein recycling complex & original description: none

Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g011699

Target	Alias	Description	ECC score	Gene Family Method
AT2G17790	ZIP3, VPS35A	VPS35 homolog A	0.03	OrthoFinder output from all 47 species
AT3G51310	VPS35C	VPS35 homolog C	0.03	OrthoFinder output from all 47 species
Aev_g16183	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
Ala_g07415	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001086.22	VPS35B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
Dcu_g44008	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.04	OrthoFinder output from all 47 species
GSVIVT01009948001	VPS35B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
LOC_Os03g58700.1	VPS35B, LOC_Os03g58700	component VPS35 of Retromer protein recycling complex	0.03	OrthoFinder output from all 47 species
Lfl_g08397	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
MA_102572g0010	VPS35B	component VPS35 of Retromer protein recycling complex	0.02	OrthoFinder output from all 47 species
MA_9038g0020	ZIP3, VPS35A	component VPS35 of Retromer protein recycling complex	0.02	OrthoFinder output from all 47 species
Ore_g08613	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Solyc02g083560.3.1	ZIP3, VPS35A,...	component VPS35 of Retromer protein recycling complex	0.04	OrthoFinder output from all 47 species
Solyc03g033400.4.1	ZIP3, VPS35A,...	component VPS35 of Retromer protein recycling complex	0.04	OrthoFinder output from all 47 species
Tin_g02135	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
Zm00001e006031_P002	VPS35B, Zm00001e006031	component VPS35 of Retromer protein recycling complex	0.04	OrthoFinder output from all 47 species
Zm00001e011849_P003	VPS35B, Zm00001e011849	component VPS35 of Retromer protein recycling complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	IEA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
CC	GO:0030906	retromer, cargo-selective complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005378	Vps35	1	512

External Links

No external refs found!

Adi_g011699 (VPS35B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation