Adi_g011656

Description : associated component *(HDC1) of histone deacetylase machineries & original description: none

Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g011656

Target	Alias	Description	ECC score	Gene Family Method
Aob_g03580	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Cba_g36633	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
GSVIVT01000253001	No alias	Chromatin organisation.histone modifications.histone...	0.05	OrthoFinder output from all 47 species
Lfl_g10369	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Ppi_g03202	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018699	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Sam_g36521	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Solyc05g056340.3.1	Solyc05g056340	associated component HDC1/Rxt3 of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Zm00001e010714_P003	Zm00001e010714	associated component HDC1/Rxt3 of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Zm00001e022328_P001	Zm00001e022328	associated component HDC1/Rxt3 of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006476	protein deacetylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016575	histone deacetylation	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0035601	protein deacylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098732	macromolecule deacylation	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006013	mannose metabolic process	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0031023	microtubule organizing center organization	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013951	Rxt3	438	479

External Links

No external refs found!

Adi_g011656

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation