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  5. Adi_g011594

Adi_g011594


Description : scaffold nucleoporin of nuclear pore complex *(NUP205) & original description: none


Gene families : OG0003848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003848_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g011594

Target Alias Description ECC score Gene Family Method Actions
Aev_g33320 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Aob_g23782 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene01846.t1 Aspi01Gene01846 scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Ceric.36G007000.1 Ceric.36G007000 scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.31 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre13.g578100 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g01801 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.05 OrthoFinder output from all 47 species
Dcu_g12341 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.06 OrthoFinder output from all 47 species
Dde_g01776 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01015528001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Gb_31636 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os02g10790.1 LOC_Os02g10790 NUP205 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g10794.1 LOC_Os02g10794 Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g12161 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Lfl_g03521 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
MA_23099g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp6g01090.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.01 OrthoFinder output from all 47 species
Msp_g14656 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Nbi_g02508 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Ore_g17338 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.07 OrthoFinder output from all 47 species
Pir_g61394 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Ppi_g08343 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Sam_g03960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo439663 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Solyc12g006480.2.1 Solyc12g006480 NUP205 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Spa_g06176 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Zm00001e014006_P001 Zm00001e014006 NUP205 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 3 1635
No external refs found!