Ehy_g08691 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g08691
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00198750 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AT5G20730 TIR5, MSG1,... Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
Adi_g057783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06750 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20472 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04069 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11427 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19294 ARF16 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g22311 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37448 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19338 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016266001 ARF16 Auxin response factor 18 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
GSVIVT01023149001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01025198001 ARF10 RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Gb_23186 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g35140.1 ARF1, LOC_Os02g35140 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_10431695g0010 ARF19, IAA22, ARF11 Auxin response factor 19 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_122218g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Mp1g07070.1 ARF10 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Ore_g30357 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g27620 ARF4 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g33451 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15530 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740 TIR5, MSG1,... ARF-type transcription factor & original description: CDS=1-2400 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016361 ARF16 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Solyc02g077560.3.1 ARF3, ETT, Solyc02g077560 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc08g008380.4.1 ARF9, Solyc08g008380 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc11g069500.2.1 ARF10, Solyc11g069500 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Solyc12g006350.3.1 ARF6, Solyc12g006350 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Spa_g17172 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26009 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29160 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013191_P001 ARF19, IAA22,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e039552_P004 HSS, ARF1-BP,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 827 919
IPR003340 B3_DNA-bd 133 234
IPR010525 ARF_dom 259 342
No external refs found!