Ehy_g07869

Description : component *(SRm160) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g07869

Target	Alias	Description	ECC score	Gene Family Method
AT2G29210	No alias	splicing factor PWI domain-containing protein	0.04	OrthoFinder output from all 47 species
Adi_g019655	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g019656	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Adi_g042058	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Ceric.1Z098000.1	Ceric.1Z098000	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Len_g19470	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Len_g50994	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Len_g59868	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g10938	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
MA_1065g0010	No alias	component SRm160 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Pir_g54700	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026743	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	46	114

External Links

No external refs found!

Ehy_g07869

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation