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  5. Sacu_v1.1_s3471.g028813

Sacu_v1.1_s3471.g028813


Description : component *(uS3c) of small plastid ribosomal-subunit proteome & original description: CDS=1-675


Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s3471.g028813
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
ATCG00800 No alias structural constituent of ribosome 0.13 OrthoFinder output from all 47 species
Aev_g14422 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Als_g09230 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g05105 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.05G042400.1 Ceric.05G042400 component *(uS3c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Ceric.05G052300.1 Ceric.05G052300 component *(uS3c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.1Z164000.1 Ceric.1Z164000 not classified & original description: pacid=50596956... 0.04 OrthoFinder output from all 47 species
Ceric.38G009200.1 Ceric.38G009200 component *(uS3c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Dcu_g13090 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
LOC_Os04g16824.1 LOC_Os04g16824 component psRPS3 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
LOC_Os09g24416.1 LOC_Os09g24416 component psRPS3 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
Lfl_g28864 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Ore_g10343 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pir_g00314 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc00g500034.1.1 Solyc00g500034 component psRPL22 of large ribosomal subunit proteome.... 0.04 OrthoFinder output from all 47 species
Zm00001e003906_P001 Zm00001e003906 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e009620_P001 Zm00001e009620 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 170
No external refs found!