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  5. Sacu_v1.1_s0502.g027443

Sacu_v1.1_s0502.g027443


Description : tyrosyl-DNA phosphodiesterase *(TDP2) & original description: CDS=114-1667


Gene families : OG0003651 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0502.g027443
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Aop_g31880 No alias tyrosyl-DNA phosphodiesterase *(TDP2) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g13656 No alias tyrosyl-DNA phosphodiesterase *(TDP2) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP HCCA
BP GO:0000492 box C/D snoRNP assembly IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 79 104
IPR005135 Endo/exonuclease/phosphatase 253 467
No external refs found!