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  5. Sacu_v1.1_s0260.g026870

Sacu_v1.1_s0260.g026870


Description : not classified & original description: CDS=25-1905


Gene families : OG0004897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004897_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0260.g026870
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109650 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene43653.t1 Aspi01Gene43653 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000400001 No alias BTB/POZ domain-containing protein At3g22104... 0.06 OrthoFinder output from all 47 species
LOC_Os04g57800.1 LOC_Os04g57800 component BPH1 of CUL3-BTB E3 ubiquitin ligase complex 0.05 OrthoFinder output from all 47 species
Ppi_g03131 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g052970.3.1 Solyc07g052970 BTB/POZ domain-containing protein At3g22104... 0.01 OrthoFinder output from all 47 species
Tin_g32264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010520_P002 Zm00001e010520 BTB/POZ domain-containing protein At3g22104... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR027356 NPH3_dom 251 532
No external refs found!