Sacu_v1.1_s0250.g026743

Description : component *(SRm160) of RNA quality control Exon Junction complex & original description: CDS=453-2657

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0250.g026743
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
Adi_g019655	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g019656	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.39	No alias	RNA processing.RNA quality control Exon Junction complex...	0.03	OrthoFinder output from all 47 species
Cre16.g678050	No alias	RNA processing.RNA quality control Exon Junction complex...	0.02	OrthoFinder output from all 47 species
Dac_g22461	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Ehy_g07869	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Mp8g09170.1	No alias	component SRm160 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Pnu_g17589	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Solyc09g030390.3.1	Solyc09g030390	component SRm160 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005049	nuclear export signal receptor activity	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	46	117

External Links

No external refs found!