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  5. Sacu_v1.1_s0234.g026528

Sacu_v1.1_s0234.g026528


Description : not classified & original description: CDS=213-3461


Gene families : OG0007491 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0234.g026528

Target Alias Description ECC score Gene Family Method Actions
Adi_g105487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05627 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g043991 OTP84 not classified & original description: CDS=230-3472 0.06 OrthoFinder output from all 47 species
Cba_g13501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G004500.1 Ceric.02G004500 not classified & original description: pacid=50584632... 0.04 OrthoFinder output from all 47 species
Ceric.15G002000.1 Ceric.15G002000 not classified & original description: pacid=50640344... 0.05 OrthoFinder output from all 47 species
Ceric.17G084700.1 Ceric.17G084700 not classified & original description: pacid=50618199... 0.04 OrthoFinder output from all 47 species
Dde_g03497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13553 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08396 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g09082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16249 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004057 arginyltransferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0016598 protein arginylation IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 833 860
IPR002885 Pentatricopeptide_repeat 601 623
IPR002885 Pentatricopeptide_repeat 398 424
IPR002885 Pentatricopeptide_repeat 699 726
IPR002885 Pentatricopeptide_repeat 501 529
IPR002885 Pentatricopeptide_repeat 572 596
IPR002885 Pentatricopeptide_repeat 634 663
IPR002885 Pentatricopeptide_repeat 671 691
IPR002885 Pentatricopeptide_repeat 296 325
IPR002885 Pentatricopeptide_repeat 192 240
IPR032867 DYW_dom 1000 1082
No external refs found!