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  5. Sacu_v1.1_s0226.g026330

Sacu_v1.1_s0226.g026330


Description : type-Ia DNA topoisomerase & original description: CDS=286-4206


Gene families : OG0003699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003699_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0226.g026330

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00253660 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA replication.type-Ia... 0.04 OrthoFinder output from all 47 species
AT4G31210 No alias DNA topoisomerase, type IA, core 0.06 OrthoFinder output from all 47 species
Adi_g021892 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0066.g036119 No alias type-Ia DNA topoisomerase & original description: CDS=286-3858 0.04 OrthoFinder output from all 47 species
Cba_g27398 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z115300.1 Ceric.1Z115300 not classified & original description: pacid=50604734... 0.06 OrthoFinder output from all 47 species
Ceric.22G057500.1 Ceric.22G057500 type-Ia DNA topoisomerase & original description:... 0.06 OrthoFinder output from all 47 species
Dde_g46327 No alias type-Ia DNA topoisomerase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035576001 No alias Cell cycle.organelle machineries.DNA replication.type-Ia... 0.05 OrthoFinder output from all 47 species
LOC_Os06g16980.1 LOC_Os06g16980 type-Ia DNA topoisomerase 0.04 OrthoFinder output from all 47 species
MA_10435445g0010 No alias type-Ia DNA topoisomerase 0.02 OrthoFinder output from all 47 species
Msp_g47727 No alias type-Ia DNA topoisomerase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17408 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28178 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g081910.2.1 Solyc02g081910 type-Ia DNA topoisomerase 0.04 OrthoFinder output from all 47 species
Zm00001e036824_P001 Zm00001e036824 type-Ia DNA topoisomerase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003852 2-isopropylmalate synthase activity IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006551 leucine metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009098 leucine biosynthetic process IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013498 Topo_IA_Znf 780 813
IPR025589 Toprim_C_rpt 848 901
IPR006171 TOPRIM_domain 147 261
IPR013497 Topo_IA_cen 279 736
No external refs found!