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  5. Sacu_v1.1_s0206.g025758

Sacu_v1.1_s0206.g025758 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : ssDNA-binding protein *(OSB) & original description: CDS=1-2208


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0206.g025758
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Adi_g082672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06417 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07070 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07428 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19037 MEF22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30594 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58990 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27300 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008664 No alias not classified & original description: CDS=1-3960 0.04 OrthoFinder output from all 47 species
Azfi_s0068.g036258 SLO1 not classified & original description: CDS=1-882 0.02 OrthoFinder output from all 47 species
Azfi_s0090.g042638 No alias not classified & original description: CDS=1-2115 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.02 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g07638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30010 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67449 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75394 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G104800.1 Ceric.04G104800 not classified & original description: pacid=50632059... 0.03 OrthoFinder output from all 47 species
Ceric.05G023100.1 Ceric.05G023100 not classified & original description: pacid=50578135... 0.04 OrthoFinder output from all 47 species
Ceric.08G045700.1 Ceric.08G045700 not classified & original description: pacid=50638513... 0.03 OrthoFinder output from all 47 species
Ceric.15G051000.1 Ceric.15G051000 not classified & original description: pacid=50640878... 0.03 OrthoFinder output from all 47 species
Ceric.17G052300.1 Ceric.17G052300 not classified & original description: pacid=50618191... 0.03 OrthoFinder output from all 47 species
Ceric.18G062200.1 Ceric.18G062200 not classified & original description: pacid=50622099... 0.03 OrthoFinder output from all 47 species
Ceric.1Z015700.1 VAC1, ECB2,... not classified & original description: pacid=50604577... 0.05 OrthoFinder output from all 47 species
Ceric.21G027500.1 Ceric.21G027500 not classified & original description: pacid=50603039... 0.03 OrthoFinder output from all 47 species
Ceric.21G077300.1 Ceric.21G077300 not classified & original description: pacid=50604263... 0.04 OrthoFinder output from all 47 species
Ceric.35G011900.1 Ceric.35G011900 not classified & original description: pacid=50581676... 0.03 OrthoFinder output from all 47 species
Ceric.37G017500.1 VAC1, ECB2,... ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.02 OrthoFinder output from all 47 species
Dde_g46895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16778 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g14001 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g62227 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004159 Put_SAM_MeTrfase 38 147
IPR002885 Pentatricopeptide_repeat 360 407
IPR002885 Pentatricopeptide_repeat 478 524
IPR002885 Pentatricopeptide_repeat 144 191
IPR002885 Pentatricopeptide_repeat 611 662
IPR002885 Pentatricopeptide_repeat 218 244
IPR002885 Pentatricopeptide_repeat 247 276
IPR002885 Pentatricopeptide_repeat 581 607
No external refs found!