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  5. Sacu_v1.1_s0199.g025558

Sacu_v1.1_s0199.g025558


Description : regulatory protein of RNA homeostasis & original description: CDS=100-1410


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0199.g025558
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00081p00108570 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Adi_g018593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081309 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aev_g04700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04427 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ceric.19G050600.1 Ceric.19G050600 not classified & original description: pacid=50576234... 0.06 OrthoFinder output from all 47 species
Ceric.38G012000.1 Ceric.38G012000 not classified & original description: pacid=50579791... 0.05 OrthoFinder output from all 47 species
Dac_g16771 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g28420 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Dcu_g17295 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Len_g00493 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Len_g57365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38302 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Pnu_g08513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08692 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pnu_g12544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09029 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09323 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Solyc06g072720.3.1 Solyc06g072720 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e040205_P001 Zm00001e040205 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 236 262
IPR000571 Znf_CCCH 123 147
No external refs found!