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  5. Sacu_v1.1_s0190.g025275

Sacu_v1.1_s0190.g025275


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome & original description: CDS=141-953


Gene families : OG0002077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0190.g025275
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.11 OrthoFinder output from all 47 species
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.18 OrthoFinder output from all 47 species
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.15 OrthoFinder output from all 47 species
Adi_g088324 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Adi_g129583 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ala_g01298 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aop_g02046 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Aspi01Gene37303.t1 Aspi01Gene37303 component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000501 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Azfi_s0091.g042854 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cba_g17641 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g45656 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.01G129200.1 Ceric.01G129200 component *(eS4) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Ceric.10G002500.1 Ceric.10G002500 component *(eS4) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.38 No alias 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.11 OrthoFinder output from all 47 species
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Dcu_g18005 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g50161 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01024668001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
GSVIVT01030295001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder output from all 47 species
GSVIVT01032756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
LOC_Os01g25610.1 LOC_Os01g25610 component RPS4 of SSU proteome 0.14 OrthoFinder output from all 47 species
LOC_Os02g01560.1 LOC_Os02g01560 component RPS4 of SSU proteome 0.13 OrthoFinder output from all 47 species
LOC_Os05g30530.1 LOC_Os05g30530 component RPS4 of SSU proteome 0.09 OrthoFinder output from all 47 species
Len_g50156 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g00770 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
MA_127596g0010 No alias component RPS4 of SSU proteome 0.08 OrthoFinder output from all 47 species
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.12 OrthoFinder output from all 47 species
Msp_g12425 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ore_g42187 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g12385 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g60718 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pp3c11_3690V3.1 Pp3c11_3690 Ribosomal protein S4 (RPS4A) family protein 0.08 OrthoFinder output from all 47 species
Pp3c1_8290V3.1 Pp3c1_8290 Ribosomal protein S4 (RPS4A) family protein 0.11 OrthoFinder output from all 47 species
Pp3c25_3736V3.1 Pp3c25_3736 Ribosomal protein S4 (RPS4A) family protein 0.02 OrthoFinder output from all 47 species
Pp3c7_23800V3.1 Pp3c7_23800 Ribosomal protein S4 (RPS4A) family protein 0.06 OrthoFinder output from all 47 species
Ppi_g06230 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g13009 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g27349 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g27350 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Sam_g38267 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo148442 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
Solyc02g070330.4.1 Solyc02g070330 component RPS4 of SSU proteome 0.12 OrthoFinder output from all 47 species
Solyc02g070340.3.1 Solyc02g070340 component RPS4 of SSU proteome 0.13 OrthoFinder output from all 47 species
Spa_g05578 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Spa_g05579 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Spa_g17898 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Spa_g23890 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g44321 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Tin_g02542 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Zm00001e006307_P001 Zm00001e006307 component RPS4 of SSU proteome 0.12 OrthoFinder output from all 47 species
Zm00001e011676_P001 Zm00001e011676 component RPS4 of SSU proteome 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032277 40S_S4_C 219 263
IPR013843 Ribosomal_S4e_N 3 39
IPR013845 Ribosomal_S4e_central_region 95 176
IPR002942 S4_RNA-bd 43 90
IPR005824 KOW 185 217
No external refs found!