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  5. Sacu_v1.1_s0186.g025087

Sacu_v1.1_s0186.g025087 (ISE1, EMB1586)


Aliases : ISE1, EMB1586

Description : not classified & original description: CDS=1-1602


Gene families : OG0006427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0186.g025087
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Aop_g11392 ISE1, EMB1586 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02013 ISE1, EMB1586 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021346.2 RH39 DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
LOC_Os02g42406.1 ISE1, EMB1586,... DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 378 478
IPR011545 DEAD/DEAH_box_helicase_dom 148 308
No external refs found!