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  5. Sacu_v1.1_s0185.g025023

Sacu_v1.1_s0185.g025023


Description : GARP subgroup HHO transcription factor & original description: CDS=22-1653


Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0185.g025023

Target Alias Description ECC score Gene Family Method Actions
AT1G13300 HRS1 myb-like transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g080200 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g37049 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g07617 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G020200.1 Ceric.06G020200 GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
LOC_Os03g55590.1 LOC_Os03g55590 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g03258 No alias GARP subgroup HHO transcription factor & original... 0.05 OrthoFinder output from all 47 species
Mp4g15170.1 No alias G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Smo402040 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 322 373
No external refs found!