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  5. Sacu_v1.1_s0149.g023267

Sacu_v1.1_s0149.g023267


Description : not classified & original description: CDS=111-2933


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0149.g023267
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g032212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12776 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G065200.1 Ceric.19G065200 not classified & original description: pacid=50576378... 0.02 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
Len_g20786 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 872 918
IPR002885 Pentatricopeptide_repeat 790 850
IPR033443 PPR_long 421 585
IPR002885 Pentatricopeptide_repeat 701 728
IPR002885 Pentatricopeptide_repeat 385 414
IPR002885 Pentatricopeptide_repeat 289 310
No external refs found!