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  5. Sacu_v1.1_s0141.g022780

Sacu_v1.1_s0141.g022780 (AML5, ML5)


Aliases : AML5, ML5

Description : not classified & original description: CDS=20-2269


Gene families : OG0000753 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0141.g022780
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00093p00085820 AML5, ML5,... Protein MEI2-like 2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Adi_g079742 AML5, ML5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g13721 AML5, ML5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e029791_P001 AML5, ML5, Zm00001e029791 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR007201 Mei2-like_Rrm_C 697 730
IPR007201 Mei2-like_Rrm_C 657 696
IPR000504 RRM_dom 214 278
IPR000504 RRM_dom 331 396
No external refs found!