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  5. Sacu_v1.1_s0133.g022270

Sacu_v1.1_s0133.g022270 (PHB1, ATPHB1)


Aliases : PHB1, ATPHB1

Description : not classified & original description: CDS=199-1050


Gene families : OG0002789 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002789_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0133.g022270

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00112040 PHB1, ATPHB1,... Prohibitin-1, mitochondrial OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G28510 PHB1, ATPHB1 prohibitin 1 0.03 OrthoFinder output from all 47 species
Adi_g023316 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g00787 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007878 PHB1, ATPHB1 not classified & original description: CDS=220-1083 0.03 OrthoFinder output from all 47 species
Dde_g01284 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12045 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30025 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21133 PHB1, ATPHB1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e009600_P001 PHB2, ATPHB2,... Prohibitin-2, mitochondrial OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001107 Band_7 33 208
No external refs found!