1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0132.g022166

Sacu_v1.1_s0132.g022166


Description : not classified & original description: CDS=1-2514


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0132.g022166

Target Alias Description ECC score Gene Family Method Actions
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.05 OrthoFinder output from all 47 species
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g100883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37527 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03700 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g04417 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g19004 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g26559 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g07339 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0027.g023505 No alias not classified & original description: CDS=32-2620 0.11 OrthoFinder output from all 47 species
Azfi_s0544.g076393 No alias not classified & original description: CDS=1-927 0.07 OrthoFinder output from all 47 species
Cba_g06488 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g06556 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07092 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g11783 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13329 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g20517 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g25491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29852 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67809 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.20G021300.1 Ceric.20G021300 not classified & original description: pacid=50566784... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.200 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g05349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46467 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01023345001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.07 OrthoFinder output from all 47 species
Len_g04841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05447 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18246 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18979 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54960 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Len_g56738 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_475393g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Nbi_g06876 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10208 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g11891 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g20260 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g24704 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g43350 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g19131 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20094 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57706 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g62205 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo41818 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 311 357
IPR002885 Pentatricopeptide_repeat 411 456
IPR002885 Pentatricopeptide_repeat 513 559
IPR002885 Pentatricopeptide_repeat 668 715
IPR002885 Pentatricopeptide_repeat 209 256
IPR002885 Pentatricopeptide_repeat 487 512
IPR002885 Pentatricopeptide_repeat 617 630
No external refs found!