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  5. Sacu_v1.1_s0128.g021907

Sacu_v1.1_s0128.g021907


Description : HYL1-interacting scaffold factor (CARP9) of miRNA biogenesis pathway & original description: CDS=1-4020


Gene families : OG0002982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002982_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0128.g021907
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
Adi_g117176 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Als_g20929 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Aob_g30277 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Aspi01Gene06052.t1 Aspi01Gene06052 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.05 OrthoFinder output from all 47 species
Aspi01Gene06055.t1 Aspi01Gene06055 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Ceric.05G022400.1 Ceric.05G022400 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Dac_g09425 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Dcu_g02053 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Ehy_g30845 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01016889001 No alias No description available 0.08 OrthoFinder output from all 47 species
LOC_Os03g08820.1 LOC_Os03g08820 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_113519g0010 CTF18 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g06020.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g27246 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Ore_g16143 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004831 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Sam_g04737 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17297 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Zm00001e000644_P002 Zm00001e000644 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e038842_P001 Zm00001e038842 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR010844 Occludin_ELL 1215 1303
No external refs found!