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  5. Sacu_v1.1_s0125.g021677

Sacu_v1.1_s0125.g021677


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex & original description: CDS=1-831


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0125.g021677
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0356.g066782 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Cba_g08602 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g02678 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01035897001 No alias Probable CCR4-associated factor 1 homolog 10... 0.03 OrthoFinder output from all 47 species
Lfl_g03678 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22790 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Lfl_g24939 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01805 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Tin_g00667 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 16 139
No external refs found!