Sacu_v1.1_s0123.g021502 (SVR1)

Aliases : SVR1

Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: CDS=51-1169

Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0123.g021502

Target	Alias	Description	ECC score	Gene Family Method
AT2G39140	SVR1	pseudouridine synthase family protein	0.05	OrthoFinder output from all 47 species
Als_g08940	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Azfi_s1775.g106727	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.04	OrthoFinder output from all 47 species
Cre02.g095121	SVR1	RNA processing.RNA...	0.02	OrthoFinder output from all 47 species
Dcu_g06821	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Dde_g15379	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Gb_12891	SVR1	rRNA pseudouridine synthase (RsuA)	0.03	OrthoFinder output from all 47 species
LOC_Os03g05806.1	SVR1, LOC_Os03g05806	rRNA pseudouridine synthase (RsuA)	0.06	OrthoFinder output from all 47 species
Len_g30464	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
MA_442440g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp1g28730.1	SVR1	rRNA pseudouridine synthase (RsuA)	0.02	OrthoFinder output from all 47 species
Nbi_g04750	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Pir_g20012	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Pnu_g06316	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.04	OrthoFinder output from all 47 species
Sam_g12462	No alias	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.05	OrthoFinder output from all 47 species
Sam_g49457	No alias	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.04	OrthoFinder output from all 47 species
Smo45172	SVR1	RNA processing.RNA...	0.04	OrthoFinder output from all 47 species
Spa_g22396	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Zm00001e000423_P001	SVR1, Zm00001e000423	rRNA pseudouridine synthase (RsuA)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004371	glycerone kinase activity	IEP	HCCA
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006071	glycerol metabolic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019400	alditol metabolic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	182	324
IPR002942	S4_RNA-bd	119	164

External Links

No external refs found!

Sacu_v1.1_s0123.g021502 (SVR1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation