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  5. Sacu_v1.1_s0114.g020920

Sacu_v1.1_s0114.g020920 (RAB2A, AT-RAB2,...)


Aliases : RAB2A, AT-RAB2, RAB-B1B, ATRAB-B1B, RABB1C, ATRABB1C, ATRAB2A

Description : B-class RAB GTPase & original description: CDS=1183-1821


Gene families : OG0001412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0114.g020920

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00136710 RAB2A, AT-RAB2,... Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
AT4G17170 RAB2A, AT-RAB2,... RAB GTPase homolog B1C 0.02 OrthoFinder output from all 47 species
Adi_g055675 RAB2A, AT-RAB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g00771 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g44198 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G017300.1 RAB2A, AT-RAB2,... B-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.1Z080100.1 RAB2A, AT-RAB2,... B-class RAB GTPase & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001001.25 RAB2A, AT-RAB2,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Cre09.g390763 RAB2A, AT-RAB2,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
GSVIVT01002785001 RAB2A, AT-RAB2,... Ras-related protein RABB1c OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032366001 ATRABB1B,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
LOC_Os02g37420.1 RAB2A, AT-RAB2,... B-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os04g39440.1 RAB2A, AT-RAB2,... B-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Lfl_g00468 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33803 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13295 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041052_P001 RAB2A, AT-RAB2,... B-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004970 ionotropic glutamate receptor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005230 extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022824 transmitter-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022835 transmitter-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030594 neurotransmitter receptor activity IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 8 168
No external refs found!