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  5. Sacu_v1.1_s0114.g020878

Sacu_v1.1_s0114.g020878


Description : substrate-to-CDC48 bridging factor *(PUX10) & original description: CDS=373-2718


Gene families : OG0003017 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0114.g020878
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00184390 evm_27.TU.AmTr_v1... Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g080786 No alias substrate-to-CDC48 bridging factor *(PUX10) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 644 673
IPR002885 Pentatricopeptide_repeat 616 638
IPR001012 UBX_dom 422 482
No external refs found!