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  5. Sacu_v1.1_s0105.g020186

Sacu_v1.1_s0105.g020186


Description : exoribonuclease *(SOV) & original description: CDS=109-2307


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0105.g020186

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
Adi_g019469 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g022401 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117140 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g06778 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11522 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08128 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69987 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene50188.t1 Aspi01Gene50188 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009277 No alias cohesin cofactor *(PDS5) & original description: CDS=453-4370 0.04 OrthoFinder output from all 47 species
Ceric.11G037000.1 Ceric.11G037000 cohesin cofactor *(PDS5) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.34G009800.1 Ceric.34G009800 cohesin cofactor *(PDS5) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g29223 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
GSVIVT01002824001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_02487 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Gb_23673 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
LOC_Os02g39920.1 LOC_Os02g39920 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os06g17840.1 LOC_Os06g17840 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Len_g21968 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09667 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10229 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10093130g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10434055g0010 No alias cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
MA_10434304g0010 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
MA_180523g0010 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
MA_523g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g25803 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28747 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14289 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g36032 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57308 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59813 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g04109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14013 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18018 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18046 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35729 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc11g012770.2.1 Solyc11g012770 cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
Spa_g09270 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18111 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02194 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11324 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20983 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030989_P001 Zm00001e030989 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR041505 Dis3_CSD2 187 264
IPR001900 RNase_II/R 294 651
No external refs found!