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  5. Sacu_v1.1_s0105.g020149

Sacu_v1.1_s0105.g020149 (NFC04, MSI4, NFC4,...)


Aliases : NFC04, MSI4, NFC4, ACG1, FVE, ATMSI4

Description : flowering time factor *(FVE) & original description: CDS=105-974


Gene families : OG0004797 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004797_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0105.g020149

Target Alias Description ECC score Gene Family Method Actions
Adi_g078795 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species
MA_359g0010 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 168 202
IPR001680 WD40_repeat 243 278
IPR022052 Histone-bd_RBBP4_N 45 111
No external refs found!