- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : AFP3
Description : not classified & original description: none
Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ehy_g07044 | |
| Cluster | HCCA: Cluster_20 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00056p00036030 | NINJA,... | RNA biosynthesis.transcriptional repression.AFP/NINJA... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G69260 | AFP1 | ABI five binding protein | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g35216 | AFP3 | transcriptional co-repressor *(AFP/NINJA) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g34419 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G095100.1 | NINJA, Ceric.04G095100 | transcriptional co-repressor *(AFP/NINJA) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_29524 | AFP3 | transcriptional co-repressor (AFP/NINJA) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g68820.1 | LOC_Os01g68820 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g30570.1 | AFP2, LOC_Os03g30570 | transcriptional co-repressor (AFP/NINJA) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g41160.1 | AFP3, LOC_Os07g41160 | transcriptional co-repressor (AFP/NINJA) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g16334 | NINJA | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g16879 | AFP3 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g04410.1 | NINJA | transcriptional co-repressor (AFP/NINJA) | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g42875 | AFP3 | transcriptional co-repressor *(AFP/NINJA) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g19056 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g03969 | NINJA | transcriptional co-repressor *(AFP/NINJA) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0004.g002066 | NINJA | not classified & original description: CDS=65-1531 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g005380.3.1 | AFP2, Solyc04g005380 | transcriptional co-repressor (AFP/NINJA) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g012210.4.1 | AFP2, Solyc05g012210 | transcriptional co-repressor (AFP/NINJA) | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g31839 | AFP3 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032308 | TDBD | 621 | 654 |
| No external refs found! |