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  5. Sacu_v1.1_s0084.g018244

Sacu_v1.1_s0084.g018244


Description : not classified & original description: CDS=306-11297


Gene families : OG0000978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0084.g018244
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00035310 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00089p00172750 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AMTR_s00700p00004930 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.09 OrthoFinder output from all 47 species
Aev_g17458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05070 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g21604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22914 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42698.t1 Aspi01Gene42698 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55586.t1 Aspi01Gene55586 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene55589.t1 Aspi01Gene55589 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0185.g056668 No alias not classified & original description: CDS=100-1869 0.03 OrthoFinder output from all 47 species
Ceric.09G071300.1 Ceric.09G071300 not classified & original description: pacid=50588528... 0.07 OrthoFinder output from all 47 species
Ceric.09G071400.1 Ceric.09G071400 not classified & original description: pacid=50587640... 0.05 OrthoFinder output from all 47 species
Ceric.21G079300.1 Ceric.21G079300 not classified & original description: pacid=50602615... 0.06 OrthoFinder output from all 47 species
Dac_g12732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013268001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01013270001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01017643001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_15429 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_23775 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_35998 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g08664 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10343795g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10426328g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10428265g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10432463g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_119498g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_295252g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_36612g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_901094g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g08780.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g07570.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g07580.2 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g12905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g009350.2.1 Solyc09g009350 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc09g009370.4.1 Solyc09g009370 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g09459 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17786 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e024722_P001 Zm00001e024722 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR026854 VPS13-like_N 4 115
IPR009543 VPS13_VAB 3307 3439
IPR031646 VPS13_extend_chorein 241 319
IPR031646 VPS13_extend_chorein 141 242
IPR031642 VPS13_mid_RBG 517 744
IPR000008 C2_dom 2513 2635
IPR009291 Vps62 1913 2057
IPR009291 Vps62 2127 2277
No external refs found!