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  5. Sacu_v1.1_s0083.g018190

Sacu_v1.1_s0083.g018190 (NTMC2T1.2, SYTB,...)


Aliases : NTMC2T1.2, SYTB, SYT2, NTMC2TYPE1.2, ATSYTB

Description : membrane tethering protein (SYT1) of ER-cytoskeleton-plasmamembrane interface & original description: CDS=286-2106


Gene families : OG0000213 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0083.g018190

Target Alias Description ECC score Gene Family Method Actions
Adi_g082961 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.02 OrthoFinder output from all 47 species
Aev_g01130 NTMC2TYPE4, NTMC2T4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16459 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.03 OrthoFinder output from all 47 species
Ceric.01G110500.1 NTMC2TYPE4,... not classified & original description: pacid=50591328... 0.03 OrthoFinder output from all 47 species
LOC_Os09g36770.3 NTMC2T1.2, SYTB,... endoplasmic reticulum-plasma membrane tethering protein... 0.02 OrthoFinder output from all 47 species
MA_10280179g0010 NTMC2T1.2, SYTB,... Synaptotagmin-2 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_N 24 100
IPR011706 Cu-oxidase_C 72 208
IPR039010 Synaptotagmin_SMP 149 325
IPR000008 C2_dom 344 417
IPR000008 C2_dom 487 589
No external refs found!