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  5. Sacu_v1.1_s0080.g017954

Sacu_v1.1_s0080.g017954 (LOS1)


Aliases : LOS1

Description : mRNA-translocation factor *(eEF2)) & original description: CDS=44-2575


Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0080.g017954

Target Alias Description ECC score Gene Family Method Actions
Aop_g13248 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70105 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15362 LOS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g58957 LOS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g20190.1 LOS1 mRNA-translocation factor (eEF2) 0.03 OrthoFinder output from all 47 species
Mp2g20200.1 LOS1 mRNA-translocation factor (eEF2) 0.03 OrthoFinder output from all 47 species
Pp3c7_1950V3.1 LOS1, Pp3c7_1950 Ribosomal protein S5/Elongation factor G/III/V family protein 0.01 OrthoFinder output from all 47 species
Ppi_g13071 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g062920.3.1 LOS1, Solyc08g062920 mRNA-translocation factor (eEF2) 0.02 OrthoFinder output from all 47 species
Spa_g06406 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30071 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000640 EFG_V-like 724 810
IPR004161 EFTu-like_2 394 467
IPR041095 EFG_II 487 549
IPR000795 T_Tr_GTP-bd_dom 17 342
IPR005517 Transl_elong_EFG/EF2_IV 610 722
No external refs found!