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  5. Sacu_v1.1_s0078.g017691

Sacu_v1.1_s0078.g017691


Description : protein factor (NERD) of non-canonical RdDM pathway & original description: CDS=1-6081


Gene families : OG0001217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0078.g017691
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT3G51120 No alias DNA binding;zinc ion binding;nucleic acid... 0.04 OrthoFinder output from all 47 species
Adi_g107366 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ala_g06673 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ala_g35223 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g08568 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Aop_g13646 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Azfi_s0212.g058205 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Cba_g23748 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Cba_g74669 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Ceric.09G099900.1 Ceric.09G099900 protein factor (NERD) of non-canonical RdDM pathway &... 0.08 OrthoFinder output from all 47 species
Dac_g09152 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Dcu_g02022 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ehy_g05103 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ehy_g26663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os10g36810.1 LOC_Os10g36810 protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Len_g13930 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Lfl_g35904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_116694g0010 No alias Zinc finger CCCH domain-containing protein 19... 0.05 OrthoFinder output from all 47 species
Mp4g08690.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.06 OrthoFinder output from all 47 species
Msp_g38424 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Nbi_g14762 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
Ore_g10283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16785 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ore_g45316 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ore_g45456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12625 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
Ppi_g49417 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ppi_g58382 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Sam_g52359 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.07 OrthoFinder output from all 47 species
Solyc02g084510.3.1 Solyc02g084510 Zinc finger CCCH domain-containing protein 44... 0.02 OrthoFinder output from all 47 species
Spa_g15744 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Spa_g49491 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Tin_g09943 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Tin_g43997 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e000091_P002 Zm00001e000091 protein factor (NERD) of non-canonical RdDM pathway 0.08 OrthoFinder output from all 47 species
Zm00001e019791_P001 Zm00001e019791 protein factor (NERD) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
Zm00001e029059_P002 Zm00001e029059 protein factor (NERD) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
Zm00001e039077_P001 Zm00001e039077 protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 1149 1222
IPR003169 GYF 1682 1722
IPR004343 Plus-3_dom 1282 1384
No external refs found!