Sacu_v1.1_s0073.g017004

Description : component *(uS17) of small ribosomal-subunit (SSU) proteome & original description: CDS=156-635

Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0073.g017004

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00158320	EMB1080,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AT3G48930	EMB1080	Nucleic acid-binding, OB-fold-like protein	0.06	OrthoFinder output from all 47 species
AT4G30800	No alias	Nucleic acid-binding, OB-fold-like protein	0.05	OrthoFinder output from all 47 species
AT5G23740	RPS11-BETA	ribosomal protein S11-beta	0.05	OrthoFinder output from all 47 species
Adi_g014139	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g22187	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g31641	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g63595	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g06312	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g40420	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0268.g061080	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.02G042300.1	Ceric.02G042300	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.06G039400.1	Ceric.06G039400	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000551.22	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Cre12.g514500	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Dac_g01215	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Dac_g01981	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g05219	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dde_g04587	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01012877001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01035927001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Gb_14912	EMB1080	component RPS11 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os04g42380.1	EMB1080, LOC_Os04g42380	component RPS11 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os04g52361.1	EMB1080, LOC_Os04g52361	component RPS11 of SSU proteome	0.07	OrthoFinder output from all 47 species
LOC_Os08g10608.1	RPS11-BETA,...	component RPS11 of SSU proteome	0.07	OrthoFinder output from all 47 species
Len_g04081	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_19350g0010	EMB1080	component RPS11 of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp4g23360.1	EMB1080	component RPS11 of SSU proteome	0.07	OrthoFinder output from all 47 species
Mp6g10500.1	EMB1080	component RPS11 of SSU proteome	0.1	OrthoFinder output from all 47 species
Msp_g22593	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Nbi_g01738	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ore_g11217	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g11218	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c1_27980V3.1	EMB1080, Pp3c1_27980	Nucleic acid-binding, OB-fold-like protein	0.04	OrthoFinder output from all 47 species
Pp3c2_13690V3.1	EMB1080, Pp3c2_13690	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Pp3s116_30V3.1	EMB1080, Pp3s116_30	Nucleic acid-binding, OB-fold-like protein	0.03	OrthoFinder output from all 47 species
Sam_g12787	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo268639	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Solyc06g073790.3.1	Solyc06g073790	component RPS11 of SSU proteome	0.07	OrthoFinder output from all 47 species
Solyc06g073800.3.1	Solyc06g073800	component RPS11 of SSU proteome	0.07	OrthoFinder output from all 47 species
Solyc12g042080.2.1	Solyc12g042080	component RPS11 of SSU proteome	0.05	OrthoFinder output from all 47 species
Spa_g08091	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g22575	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g31268	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g44672	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e006955_P001	RPS11-BETA,...	component RPS11 of SSU proteome	0.05	OrthoFinder output from all 47 species
Zm00001e041635_P001	RPS11-BETA,...	component RPS11 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	HCCA
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0004784	superoxide dismutase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006801	superoxide metabolic process	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0010024	phytochromobilin biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016636	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	IEP	HCCA
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051202	phytochromobilin metabolic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	74	142
IPR032440	Ribosomal_S11_N	4	72

External Links

No external refs found!

Sacu_v1.1_s0073.g017004

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation