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  5. Sacu_v1.1_s0070.g016669

Sacu_v1.1_s0070.g016669


Description : not classified & original description: CDS=25-1776


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0070.g016669

Target Alias Description ECC score Gene Family Method Actions
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0449.g070725 No alias not classified & original description: CDS=208-3285 0.03 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g33749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008365001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_40990 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10437209g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_22839g0010 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Ore_g44903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR011205 UCP015417_vWA 32 644
IPR011709 DEAD-box_helicase_OB_fold 206 287
IPR007502 Helicase-assoc_dom 48 134
No external refs found!