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  5. Sacu_v1.1_s0069.g016534

Sacu_v1.1_s0069.g016534


Description : GARP subgroup PHL transcription factor & original description: CDS=221-1459


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0069.g016534

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00096800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
Aev_g11835 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aev_g12428 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g13064 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Als_g04353 PHL1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g32729 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g42445 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aob_g01648 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aob_g29353 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g30442 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g05983 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene19753.t1 Aspi01Gene19753 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene33756.t1 Aspi01Gene33756 transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35964.t1 Aspi01Gene35964 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015442 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Dcu_g17436 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g38693 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g04920 KAN2 KANADI-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g31337 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ehy_g31338 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
LOC_Os02g14490.1 LOC_Os02g14490 Putative Myb family transcription factor At1g14600... 0.05 OrthoFinder output from all 47 species
LOC_Os05g40960.1 LOC_Os05g40960 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os06g35140.1 LOC_Os06g35140 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os08g25820.2 LOC_Os08g25820 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Len_g22909 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Mp3g04970.1 KAN, KAN1 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g24104 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Msp_g31008 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Nbi_g07407 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ore_g09161 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g17264 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g39083 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Pir_g55133 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g04532 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g05575 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g22170 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014434 No alias not classified & original description: CDS=36-716 0.05 OrthoFinder output from all 47 species
Sam_g39281 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Spa_g04247 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Spa_g22319 No alias GARP subgroup PHL transcription factor & original... 0.06 OrthoFinder output from all 47 species
Spa_g51060 No alias GARP subgroup PHL transcription factor & original... 0.1 OrthoFinder output from all 47 species
Spa_g56754 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Zm00001e030689_P002 Zm00001e030689 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 45 95
No external refs found!