Sacu_v1.1_s0068.g016468 (VPS26B)

Aliases : VPS26B

Description : component *(VPS26) of Retromer protein recycling complex & original description: CDS=1-804

Gene families : OG0003204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003204_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0068.g016468
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
Ceric.1Z146600.1	VPS26B, Ceric.1Z146600	component *(VPS26) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020589.5	VPS26B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
Dac_g17773	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01038607001	VPS26B	Vesicle trafficking.endomembrane trafficking.protein...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028934	Vps26-related	10	252
IPR002885	Pentatricopeptide_repeat	325	371
IPR002885	Pentatricopeptide_repeat	299	323
IPR002885	Pentatricopeptide_repeat	400	422
IPR002885	Pentatricopeptide_repeat	191	238
IPR002885	Pentatricopeptide_repeat	90	138

External Links

No external refs found!