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  5. Sacu_v1.1_s0061.g015313

Sacu_v1.1_s0061.g015313


Description : chromatin remodeling factor *(Ris1) & original description: CDS=1-3300


Gene families : OG0003006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0061.g015313
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00013990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cba_g10149 No alias chromatin remodeling factor *(Ris1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10724 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00960 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01006339001 EDA16 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pir_g51890 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25166 No alias chromatin remodeling factor *(Ris1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15300 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27460 EDA16 chromaTin remodeling factor *(Ris1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 942 1041
IPR000330 SNF2_N 376 784
IPR018957 Znf_C3HC4_RING-type 822 859
No external refs found!