Sacu_v1.1_s0060.g015210

Description : primase component *(POLA3) of DNA polymerase alpha complex & original description: CDS=1-1644

Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0060.g015210

Target	Alias	Description	ECC score	Gene Family Method
AT1G67320	No alias	DNA primase, large subunit family	0.06	OrthoFinder output from all 47 species
Als_g00918	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Azfi_s0242.g059810	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Ceric.22G004000.1	Ceric.22G004000	primase component *(POLA3) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.68	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.05	OrthoFinder output from all 47 species
Cre06.g293000	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.05	OrthoFinder output from all 47 species
Dac_g13828	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.06	OrthoFinder output from all 47 species
Dcu_g14762	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.11	OrthoFinder output from all 47 species
Ehy_g19206	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
GSVIVT01029087001	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.06	OrthoFinder output from all 47 species
Gb_25310	No alias	Probable DNA primase large subunit OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Gb_25312	No alias	primase component POLA3 of DNA polymerase alpha complex	0.06	OrthoFinder output from all 47 species
LOC_Os07g22400.2	LOC_Os07g22400	primase component POLA3 of DNA polymerase alpha complex	0.06	OrthoFinder output from all 47 species
MA_99205g0020	No alias	primase component POLA3 of DNA polymerase alpha complex	0.06	OrthoFinder output from all 47 species
Mp7g17480.1	No alias	primase component POLA3 of DNA polymerase alpha complex	0.12	OrthoFinder output from all 47 species
Msp_g07837	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.06	OrthoFinder output from all 47 species
Ppi_g63485	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Solyc04g045530.4.1	Solyc04g045530	primase component POLA3 of DNA polymerase alpha complex	0.07	OrthoFinder output from all 47 species
Spa_g08160	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Tin_g10410	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.11	OrthoFinder output from all 47 species
Zm00001e039405_P003	Zm00001e039405	primase component POLA3 of DNA polymerase alpha complex	0.01	OrthoFinder output from all 47 species
Zm00001e040751_P005	Zm00001e040751	primase component POLA3 of DNA polymerase alpha complex	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003876	AMP deaminase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006188	IMP biosynthetic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0032261	purine nucleotide salvage	IEP	HCCA
BP	GO:0032264	IMP salvage	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043101	purine-containing compound salvage	IEP	HCCA
BP	GO:0043173	nucleotide salvage	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0046040	IMP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0047623	adenosine-phosphate deaminase activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0106380	purine ribonucleotide salvage	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007238	DNA_primase_lsu_euk/arc	197	476

External Links

No external refs found!

Sacu_v1.1_s0060.g015210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation