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  5. Sacu_v1.1_s0059.g015168

Sacu_v1.1_s0059.g015168


Description : not classified & original description: CDS=1-606


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0059.g015168
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00074p00172670 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00074p00172740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g09900... 0.02 OrthoFinder output from all 47 species
Adi_g015683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25487 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.02 OrthoFinder output from all 47 species
MA_7256709g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.01 OrthoFinder output from all 47 species
Smo74408 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.02 OrthoFinder output from all 47 species
Tin_g19161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 115 163
IPR002885 Pentatricopeptide_repeat 87 112
IPR002885 Pentatricopeptide_repeat 28 46
No external refs found!