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  5. Sacu_v1.1_s0059.g015028

Sacu_v1.1_s0059.g015028


Description : scaffold component *(FRY) of RAM signalling pathway & original description: CDS=1288-7668


Gene families : OG0004160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004160_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0059.g015028
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT5G15680 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g059761 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.05 OrthoFinder output from all 47 species
Ala_g02730 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.06 OrthoFinder output from all 47 species
Dcu_g04159 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Ehy_g24660 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
GSVIVT01036514001 No alias No description available 0.07 OrthoFinder output from all 47 species
MA_10435894g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10436406g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g25800 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Smo84835 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc02g089370.2.1 Solyc02g089370 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR029473 MOR2-PAG1_mid 578 1702
IPR025481 Cell_Morphogen_C 1738 2029
IPR025614 Cell_morpho_N 19 538
No external refs found!