Sacu_v1.1_s0057.g014794 (RNA_POL_II_LSRNA_POL_I...)

Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex & original description: CDS=152-5674

Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0057.g014794
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00152770	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.03	OrthoFinder output from all 47 species
Adi_g086870	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0993.g094765	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Ceric.19G033900.1	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.15	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Dcu_g02060	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Dde_g04017	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01008740001	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
Mp4g14340.1	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species
Ore_g27265	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Tin_g05249	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001000	GH10_dom	2	190
IPR007081	RNA_pol_Rpb1_5	827	1416
IPR007080	RNA_pol_Rpb1_1	14	352
IPR000722	RNA_pol_asu	354	522
IPR007066	RNA_pol_Rpb1_3	526	689
IPR007075	RNA_pol_Rpb1_6	893	1077
IPR000684	RNA_pol_II_repeat_euk	1698	1711
IPR000684	RNA_pol_II_repeat_euk	1656	1669
IPR000684	RNA_pol_II_repeat_euk	1621	1634
IPR000684	RNA_pol_II_repeat_euk	1607	1620
IPR000684	RNA_pol_II_repeat_euk	1551	1564
IPR000684	RNA_pol_II_repeat_euk	1600	1613
IPR000684	RNA_pol_II_repeat_euk	1642	1655
IPR000684	RNA_pol_II_repeat_euk	1565	1578
IPR000684	RNA_pol_II_repeat_euk	1628	1641
IPR000684	RNA_pol_II_repeat_euk	1684	1697
IPR000684	RNA_pol_II_repeat_euk	1579	1592
IPR000684	RNA_pol_II_repeat_euk	1614	1627
IPR000684	RNA_pol_II_repeat_euk	1670	1683
IPR000684	RNA_pol_II_repeat_euk	1593	1606
IPR000684	RNA_pol_II_repeat_euk	1635	1648
IPR007073	RNA_pol_Rpb1_7	1162	1295
IPR007083	RNA_pol_Rpb1_4	720	820

External Links

No external refs found!

Sacu_v1.1_s0057.g014794 (RNA_POL_II_LSRNA_POL_I...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation