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  5. Sacu_v1.1_s0057.g014762

Sacu_v1.1_s0057.g014762


Description : not classified & original description: CDS=762-1922


Gene families : OG0000797 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000797_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0057.g014762

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00109520 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g116890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010791 No alias not classified & original description: CDS=457-2499 0.05 OrthoFinder output from all 47 species
Cba_g32330 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G074600.1 Ceric.14G074600 not classified & original description: pacid=50634622... 0.02 OrthoFinder output from all 47 species
Ceric.21G063200.1 Ceric.21G063200 not classified & original description: pacid=50603116... 0.02 OrthoFinder output from all 47 species
GSVIVT01021200001 No alias U-box domain-containing protein 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os05g49810.1 LOC_Os05g49810 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g08815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g17690.1 No alias U-box domain-containing protein 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g14525 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g31162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034144_P001 Zm00001e034144 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 100 134
No external refs found!