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  5. Sacu_v1.1_s0057.g014693

Sacu_v1.1_s0057.g014693


Description : not classified & original description: CDS=1-2931


Gene families : OG0016743 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0016743_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0057.g014693
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Ala_g05266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 334 359
IPR002885 Pentatricopeptide_repeat 665 694
IPR002885 Pentatricopeptide_repeat 463 493
IPR002885 Pentatricopeptide_repeat 564 592
IPR002885 Pentatricopeptide_repeat 637 660
IPR002885 Pentatricopeptide_repeat 700 729
IPR002885 Pentatricopeptide_repeat 877 898
IPR002885 Pentatricopeptide_repeat 801 848
IPR002885 Pentatricopeptide_repeat 158 205
IPR002885 Pentatricopeptide_repeat 258 306
IPR002885 Pentatricopeptide_repeat 360 401
IPR046848 E_motif 920 971
No external refs found!