Solyc09g090810.2.1 (Solyc09g090810.2)

Aliases : Solyc09g090810.2

Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. SU(VAR)3-9 homolog 9 (SUVH9)

Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc09g090810.2.1
Cluster HCCA cluster: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
Cre02.g089200 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
Cre07.g352600 No alias No description available 0.02 Gene family
GSVIVT01005913001 No alias No description available 0.03 Gene family
LOC_Os05g41172 Os05g0490700 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
MA_790260g0010 No alias No description available 0.03 Gene family
Solyc06g060960.2.1 Solyc06g060960.2 No description available 0.04 Gene family
Zm00001d005650 GRMZM2G300955 No description available 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003105 SRA_YDG 320 474
IPR007728 Pre-SET_dom 505 602
IPR001214 SET_dom 621 753
No external refs found!