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  5. Sacu_v1.1_s0054.g014238

Sacu_v1.1_s0054.g014238 (SSP5)


Aliases : SSP5

Description : subcluster B phosphatase & original description: CDS=102-1616


Gene families : OG0000687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0054.g014238

Target Alias Description ECC score Gene Family Method Actions
Ala_g14972 SSP5 subcluster B phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03416 SSP5 subcluster B phosphatase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01010477001 SSP5 Protein modification.dephosphorylation.aspartate-based... 0.03 OrthoFinder output from all 47 species
LOC_Os07g10690.1 SSP5, LOC_Os07g10690 RNA polymerase-II phosphatase. subcluster B phosphatase 0.02 OrthoFinder output from all 47 species
Lfl_g10741 SSP5 subcluster B phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g17076 No alias subcluster B phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e040451_P004 SSP5, Zm00001e040451 RNA polymerase-II phosphatase. subcluster B phosphatase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR004274 FCP1_dom 316 476
No external refs found!