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  5. Sacu_v1.1_s0053.g014166

Sacu_v1.1_s0053.g014166 (RVE2, CIR1)


Aliases : RVE2, CIR1

Description : transcription factor *(REVEILLE) & original description: CDS=5-1750


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0053.g014166
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 LHY1, LHY,... Multi-process regulation.circadian clock.core oscillator... 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00237480 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.evening element... 0.03 OrthoFinder output from all 47 species
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G01520 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G46830 CCA1 circadian clock associated 1 0.02 OrthoFinder output from all 47 species
AT3G09600 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G37260 RVE2, CIR1 Homeodomain-like superfamily protein 0.01 OrthoFinder output from all 47 species
Aob_g01863 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16812.t1 Aspi01Gene16812 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16814.t1 Aspi01Gene16814 transcription factor *(REVEILLE) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene31231.t1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31232.t1 LHY1, LHY,... circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene50880.t1 Aspi01Gene50880 circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58319.t1 RVE1, Aspi01Gene58319 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58319.t2 RVE1, Aspi01Gene58319 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g008971 RVE1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Cre06.g275350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 OrthoFinder output from all 47 species
Dac_g22032 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33064 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16695 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g07010.1 LOC_Os05g07010 transcription factor (MYB-related) 0.07 OrthoFinder output from all 47 species
LOC_Os06g07640.1 LOC_Os06g07640 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species
Nbi_g01370 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16770 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32229 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011198 No alias circadian clock factor *(REVEILLE) & original... 0.03 OrthoFinder output from all 47 species
Smo166821 No alias Multi-process regulation.circadian clock.core oscillator... 0.04 OrthoFinder output from all 47 species
Solyc03g098320.4.1 RVE1, Solyc03g098320 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Solyc10g084370.3.1 Solyc10g084370 transcription factor (MYB-related). REVEILLE circadian... 0.03 OrthoFinder output from all 47 species
Spa_g21846 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38661 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006465_P001 Zm00001e006465 transcription factor (MYB-related) 0.06 OrthoFinder output from all 47 species
Zm00001e016853_P001 Zm00001e016853 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Zm00001e041379_P001 RVE1, Zm00001e041379 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004664 prephenate dehydratase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 42 85
No external refs found!